clustering paired-end reads

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rwenang

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Join Date: Jan 2009

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#1

clustering paired-end reads

02-01-2011, 12:12 AM

Hi Guys,

Anybody can tell me which tools to use for paired-end reads clustering?
In addition, I would like to do the clustering for 5 different datasets.

I looked through UCLUST and CD-HIT, and none of them mentioned paired-end clustering, or multi dataset clistering.
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seb567

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Join Date: Jul 2008

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#2

02-03-2011, 08:13 AM

According to which criterion do you want the grouping process to be executed ?
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rwenang

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#3

02-06-2011, 08:15 PM

it will be a simple identity match (97%).
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