Are there any tools to convert from the CASAVA file format to VCF? I would like to be able to view the output in IGV but I am having problems. Newbie in this kind of thing.
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I'm also looking for something that does that. But after looking and looking and seeing many people ask for this but no one answer, I've decided to write my own. Would you be interested in helping me test it?
-krish -
I have been looking for this too, when I contacted Illumina they said there was no way but the community has figured out how to do this and to refer to SeqAnswers!! but i don't see the thread..Comment
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cassava to vcf
Hi guyz
Has any one figured it out to parse cassava file to VCF. If yes, please post that information.
Many thanks
sp20Comment
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Any luck in getting CASAVA variants into VCF format????Comment
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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