-
@Kapara sometimes reality does not follow what is written in the paper. Journals don't always enforce these claim submissions so it would be best to email the authors and confirm. -
I would email all four authors...they do all have emails on the Article as sort of corresponding authors.Leave a comment:
-
Hey GenoMax, thanks!
At the end of the article, in Data availability, it's said:
Was I wrong to understand from that that the assembled genome was deposited as well?The Antarctic blackfin icefish C. aceratus genome and transcriptome data have been deposited in the NCBI database as BioProject PRJNA420419.
Regards asking for the assembly in the mail.
Is it ok to send a letter to all four supplied addresses at once? Or would it be better to try getting their help one after the other?Leave a comment:
-
People may not always submit the corresponding assemblies to NCBI. You could email the authors and ask.Leave a comment:
-
Finding a genome assembly in BioProject
Hey all, fresh MSc. student and user here.
I'm looking for the genome assembly of Chaenocephalus aceratus (Antarctic blackfin icefish) which should be found in BioProject PRJNA420419, as reported by the writers of this article.
However, as far as I understand, the BioProject data only links to 14 SRA Experiments in 13 BioSamples.
There is a link to genome information of that organism in a green tile at the right side of the page. However, it links to another BioProject with different accession number (PRJEB12469 instead of PRJNA420419).
Am I missing something or is it the assembly that is missing?
Thanks ahead.
-
Developments in sequencing technologies and methodologies have transformed the field of epigenetics, giving researchers a better way to understand the complex world of gene regulation and heritable modifications. This article explores some of the diverse sequencing methods employed in the study of epigenetics, ranging from classic techniques to cutting-edge innovations while providing a brief overview of their processes, applications, and advances.
Methylation Detect...05-31-2023, 10:46 AM -
Differential Expression and Data Visualization: Recommended Tools for Next-Level Sequencing Analysis
After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...05-23-2023, 12:26 PM -
Continuing from our previous article, we share variant analysis and genome assembly tools recommended by our experts Dr. Medhat Mahmoud, Postdoctoral Research Fellow at Baylor College of Medicine, and Dr. Ming "Tommy" Tang, Director of Computational Biology at Immunitas and author of From Cell Line to Command Line.
Variant detection and analysis tools
Mahmoud classifies variant detection work into two main groups: short variants (<50...05-19-2023, 10:03 AM
Leave a comment: