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  • #1

    BWA problem

    BWA version 0.7.12
    Indexed Genome GRCh38

    bwa mem -t 1 BWA_GRCh38 input.fq > output.sam

    when I try to map the following sequence to GRCh38. BWA stuck forever and do not stop. Can anyone reproduce it?


    input.fq
    @V300037498L4C001R0040237633/2
    GGCTCTGCAGACAGAGCTGCAATGAAGACAGACACCGTTCCCTGCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCTCCCCCCTCCCCTCCCCCCGCGC
    +
    FFFEFFFFFF9FFFEFFCFFFFFFFFFEBFFFFFFEB;13;;*5.2;CDA7:[email protected]=,[email protected])4B*/:.*B%+B73.D4CA)5&7>8709;1,4/<'(,
    Tags: None
  • #2
    Sorry I post to wrong forum. Admin please move this to Bioinformatics.

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