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  • Khanjan
    Member
    • Jan 2010
    • 20
    #1

    Best Cross species aligner

    Hi guys,

    Can anyone give me some insight on which is the best cross species aligner?

    I am using sim4cc right now. It works great, however, I want output in the form of .psl files. I can do some post processing of the sim4cc output files. However, I was curious if other cross species aligners are better/as good as sim4cc and give psl outputs ( eg. BLAT, CAT, SLAM, etc) ?

    Thanks a lot in advance,
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