When running cufflinks I get the following error:
$ cufflinks -G annotation.gtf ./s_1/accepted_hits.bam
cufflinks: /usr/lib64/libz.so.1: no version information available (required by cufflinks)
Error: sort order of reads in BAMs must be the same
I am using TopHat v1.1.4 to create the BAMs with bowtie indexes.
The cufflinks version is cufflinks v0.9.3.
Based on previous posts I tried reverting from the BAM to SAM, but got the same result.
Any ideas? Thanks!
$ cufflinks -G annotation.gtf ./s_1/accepted_hits.bam
cufflinks: /usr/lib64/libz.so.1: no version information available (required by cufflinks)
Error: sort order of reads in BAMs must be the same
I am using TopHat v1.1.4 to create the BAMs with bowtie indexes.
The cufflinks version is cufflinks v0.9.3.
Based on previous posts I tried reverting from the BAM to SAM, but got the same result.
Any ideas? Thanks!
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