Hi all,
Does anyone have recommendations for good progams for calculating the per base sequence coverage for mapped reads in sam or bam format? I'd like for the output format to be human readable (not tdf) so I can input into R for downstream analysis.
Sorry if this seems basic-- I just haven't been able to lay hands on just the right script and I'm sure there's one out there somewhere that will be faster than something my newbie-self can program!
Thanks!!!
Lizzy
Does anyone have recommendations for good progams for calculating the per base sequence coverage for mapped reads in sam or bam format? I'd like for the output format to be human readable (not tdf) so I can input into R for downstream analysis.
Sorry if this seems basic-- I just haven't been able to lay hands on just the right script and I'm sure there's one out there somewhere that will be faster than something my newbie-self can program!
Thanks!!!
Lizzy
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