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  • DEXSeq errors with the sample data

    I'm going to use DEXSeq to analyses my PE data (honeybee genome, 3 reps of controls or trt, 3 time-points).

    I tried the code for the drosophila sample data, and it showed an error in the end:

    Error in gzfile(file, "wb") : cannot open the connection
    In addition: Warning message:
    In gzfile(file, "wb") :
    cannot open compressed file '../data/pasillaDEXSeqDataSet.RData', probable reason 'No such file or directory'

    Does this mean it cannot make a plot?

    My gene expression data is from Tophat/Cuffdiff, and the splicing.diff file didn't show any hits/significance.

    I don't know how to run HTseq or python, but I'm willing to learn more if I need.

    Do I need to install python on my computer?

    Sorry about these many questions... Thank you so much if you can help me!!!!

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