Header Leaderboard Ad

Collapse

Convert vcf to bed based on PS field

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Convert vcf to bed based on PS field

    Hello,
    I want to convert the VCF file with phase information into a phase block bed format.
    So if this is the file:

    #CHROM POS REF ALT GT PS
    Chr_1 1223 A G 1|0 1223
    Chr_1 1245 A G 1|0 1223
    Chr_1 1297 A G 1|0 1223
    Chr_1 1450 A G 1|0 1450
    Chr_1 1498 A G 1|0 1450

    I wish to obtain a file like:

    #CHROM START END
    Chr_1 1223 1297
    Chr_1 1450 1498

    Please help!

Latest Articles

Collapse

  • seqadmin
    How RNA-Seq is Transforming Cancer Studies
    by seqadmin



    Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
    09-07-2023, 11:15 PM
  • seqadmin
    Methods for Investigating the Transcriptome
    by seqadmin




    Ribonucleic acid (RNA) represents a range of diverse molecules that play a crucial role in many cellular processes. From serving as a protein template to regulating genes, the complex processes involving RNA make it a focal point of study for many scientists. This article will spotlight various methods scientists have developed to investigate different RNA subtypes and the broader transcriptome.

    Whole Transcriptome RNA-seq
    Whole transcriptome sequencing...
    08-31-2023, 11:07 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Today, 07:42 AM
0 responses
9 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-22-2023, 09:05 AM
0 responses
23 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-21-2023, 06:18 AM
0 responses
16 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-20-2023, 09:17 AM
0 responses
16 views
0 likes
Last Post seqadmin  
Working...
X