Optimal params for Bowtie

JohnK

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Join Date: Feb 2010

Posts: 106
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#1

Optimal params for Bowtie

02-14-2011, 07:49 AM

Hi, I'm hoping this isn't a re-post (maybe I didn't search the right keywords), but I'm looking for optimal parameters for some Illumina paired-end data I'd like to map via Bowtie. Does anyone have any suggestions? Thank you for your help!

J
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csoong

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Join Date: Jun 2009

Posts: 74
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#2

02-14-2011, 08:16 AM

unfortunately John, there is no optimal parameters it all depends on what you're looking for. it may sound crazy -- good luck!
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