Does anyone of any suggestions for RNA-seq quantitation tool using an referenced genome for illumina reads?
Seqanswers Leaderboard Ad
Collapse
Announcement
Collapse
No announcement yet.
X
-
Thank you for the suggestions, I think SeqMonk is the closest thing to what I am looking for, simple and basic; however it doesnt allow me to import my own annotated genome nor does it accept fastq files. Any other suggestions, I am continuing to look at other packages.
Thanks
Comment
-
My institute does not have subscription to the journal anymore. Maybe because most articles are open-access. :sigh:
a free trial does grant me access to it. but only good for 30 days.
Originally posted by klaas.vandepoele View PostPlease have a look at this paper 'From RNA-seq reads to differential expression results' from Oshlack et al., 2010. Also consider adding Cufflinks and Scripture to Table 1.
KlaasLast edited by liux; 03-01-2011, 01:42 PM.
Comment
Latest Articles
Collapse
-
by seqadmin
The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...-
Channel: Articles
05-06-2024, 07:48 AM -
-
by seqadmin
The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...-
Channel: Articles
04-22-2024, 07:01 AM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, 05-10-2024, 06:35 AM
|
0 responses
16 views
0 likes
|
Last Post
by seqadmin
05-10-2024, 06:35 AM
|
||
Started by seqadmin, 05-09-2024, 02:46 PM
|
0 responses
21 views
0 likes
|
Last Post
by seqadmin
05-09-2024, 02:46 PM
|
||
Started by seqadmin, 05-07-2024, 06:57 AM
|
0 responses
19 views
0 likes
|
Last Post
by seqadmin
05-07-2024, 06:57 AM
|
||
Started by seqadmin, 05-06-2024, 07:17 AM
|
0 responses
20 views
0 likes
|
Last Post
by seqadmin
05-06-2024, 07:17 AM
|
Comment