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  • bioramg
    Member
    • Apr 2014
    • 12

    Genome size estimation - Reg.

    hi,
    I would like to estimate plant mitochondrial genome size using Illumina pair-end (each one is 8 GB Raw Reads)
    I used the following command for estimation:

    ./../bin/bin/bbmap/kmercountexact.sh in=trim_CKEMJ1.fastq in2=trim_CKEMJ2.fastq khist=hist.txt peaks=peaks.txt -Xmx188G

    Sorry.

    I found it in peaks.txt file.

    Thank you
    Last edited by bioramg; 03-06-2020, 12:49 AM.

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