hi,
I would like to estimate plant mitochondrial genome size using Illumina pair-end (each one is 8 GB Raw Reads)
I used the following command for estimation:
./../bin/bin/bbmap/kmercountexact.sh in=trim_CKEMJ1.fastq in2=trim_CKEMJ2.fastq khist=hist.txt peaks=peaks.txt -Xmx188G
Sorry.
I found it in peaks.txt file.
Thank you
I would like to estimate plant mitochondrial genome size using Illumina pair-end (each one is 8 GB Raw Reads)
I used the following command for estimation:
./../bin/bin/bbmap/kmercountexact.sh in=trim_CKEMJ1.fastq in2=trim_CKEMJ2.fastq khist=hist.txt peaks=peaks.txt -Xmx188G
Sorry.
I found it in peaks.txt file.
Thank you