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  • kdewa
    Junior Member
    • Apr 2020
    • 4
    #1

    Installing TB-Profiler tool using Anaconda: incompatibility issue

    Hi,

    I'm new to bioinformatics. I'm having trouble installing the TB-Profiler tool (used for deducing drug susceptibility from microbial WGS data).

    I used the instructions for installing the tool using Terminal (MacOs Mojave) and Anaconda.
    GitHub - jodyphelan/TBProfiler: Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
    https://github.com/jodyphelan/TBProfiler/
    Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data - jodyphelan/TBProfiler


    However, I keep running into the error, 'failed with initial frozen solve' and 'Found conflicts!'

    Code:
    conda install -c bioconda tb-profiler samtools=1.9=h7c4ea83_11 ncurses=6.1=h0a44026_1002
Collecting package metadata (current_repodata.json): done
Solving environment: [B]failed with initial frozen solve. Retrying with flexible solve.[/B]
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: / 
Found conflicts! Looking for incompatible packages.
    What follows is a list of just a few of the detected incompatiblities:

    Code:
    [B]UnsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment:[/B]

Specifications:

  - anaconda-navigator -> python[version='2.7.*|3.5.*|3.6.*|3.4.*']
  - anaconda-project -> python[version='3.4.*|>=3.8,<3.9.0a0']
  - anaconda==2020.02 -> python[version='3.6.10|3.7.6|3.8.1',build='h359304d_0|h359304d_1|h359304d_2']
...
  - testpath -> python[version='3.4.*|>=3.8,<3.9.0a0']
  - watchdog -> python[version='>=3.5,<3.6.0a0']
  - zict -> python[version='>=3.8,<3.9.0a0']

Your python: python=3.7

If python is on the left-most side of the chain, that's the version you've asked for. When python appears to the right, that indicates that the thing on the left is somehow not available for the python version you are constrained to. Note that conda will not change your python version to a different minor version unless you explicitly specify
that.

The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package python_abi conflicts for:
pyflakes -> python -> python_abi[version='3.6.*|3.6|3.8.*|3.7.*',build='*_cp36m|*_cp37m|*_pypy36_pp73|*_cp38']
jupyter_core -> python_abi[version='2.7.*|3.6|3.6.*|3.8.*|3.7.*',build='*_cp37m|*_cp36m|*_pypy36_pp73|*_cp27m|*_cp38']

...And many more
    Apparently something has gone wrong in installing TB-Profiler and the required additional packages. And it has to do with version incompatibilities?

    Does anybody recognize what has gone wrong and what can be done about it?

    I wondered whether a 'clean install' of both TB-Profiler and all related modules is useful? If so, how does one do that? I didn't find a clear 'uninstalling' module for TB-Profiler in Anaconda.

    When I try to use my current installation of TB-PRofiler for analysis of a fastq-file, I get this error:
    Code:
    TypeError: profiler() got an unexpected keyword argument 'af'
    This is a known bug, which could be resolved by installing a more recent version of one of the prerequisites of TB-Profiler, using this code:
    Code:
    conda install pathogen-profiler=1.3
    (https://github.com/jodyphelan/TBProfiler/issues/39)

    However, when trying to install I run into the same unsatisfiable error as described above.

    Any help is much appreciated.

    regards,
    Klaas
    Tags: None
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #2
    Is order of repositories in your ".condarc" file correct?

    Code:
    conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
    All packages may not be available for all OS.

    Comment

    • kdewa
      Junior Member
      • Apr 2020
      • 4
      #3
      Hi GenoMax

      After running the 'add channels' commands I get the below

      Code:
      Warning: 'defaults' already in 'channels' list, moving to the top
Warning: 'bioconda' already in 'channels' list, moving to the top
Warning: 'conda-forge' already in 'channels' list, moving to the top
      When again trying to install TB-Profiler I still get the same error code

      Code:
      Found conflicts! Looking for incompatible packages.
      The list of incompatibilities seems to be hundreds of lines long, so likely there is something fundamentally wrong:

      Code:
      Package python_abi conflicts for:
pyflakes -> python -> python_abi[version='3.6.*|3.6|3.8.*|3.7.*',build='*_cp36m|*_cp37m|*_pypy36_pp73|*_cp38']
jupyter_core -> python_abi[version='2.7.*|3.6|3.6.*|3.8.*|3.7.*',build='*_cp37m|*_cp36m|*_pypy36_pp73|*_cp27m|*_cp38']
python-language-server -> flake8 -> python_abi==3.6[build=*_pypy36_pp73]
astropy -> numpy[version='>=1.16'] -> python_abi==3.6[build=*_pypy36_pp73]
wrapt -> python_abi[version='2.7.*|3.6|3.6.*|3.8.*|3.7.*',build='*_cp37m|*_cp27m|*_cp36m|*_pypy36_pp73|*_cp38']
simplegeneric -> python -> python_abi==3.6[build=*_pypy36_pp73]
pytest-openfiles -> psutil -> python_abi[version='2.7.*|3.6|3.6.*|3.8.*|3.7.*',build='*_cp27m|*_cp37m|*_pypy36_pp73|*_cp36m|*_cp38']
python-jsonrpc-server -> future -> python_abi[version='2.7.*|3.6|3.6.*|3.7.*|3.8.*',build='*_cp27m|*_pypy36_pp73|*_cp36m|*_cp37m|*_cp38']
pymongo -> python[version='>=3.6,<3.7.0a0'] -> python_abi==3.6[build=*_pypy36_pp73]
sip -> python[version='>=3.6,<3.7.0a0'] -> python_abi==3.6[build=*_pypy36_pp73]
gevent -> cffi[version='>=1.11.5'] -> python_abi[version='2.7.*|3.6.*|3.6|3.8.*|3.7.*',build='*_cp27m|*_cp37m|*_cp36m|*_pypy36_pp73|*_cp38']
pkginfo -> python -> python_abi==3.6[build=*_pypy36_pp73]
python.app -> python_abi[version='2.7.*|3.6|3.6.*|3.8.*|3.7.*',build='*_cp27m|*_pypy36_pp73|*_cp37m|*_cp36m|*_cp38']
openpyxl -> python[version='>=3.6'] -> python_abi==3.6[build=*_pypy36_pp73]
traitlets -> python_abi[version='2.7.*|3.6|3.8.*|3.7.*|3.6.*',build='*_cp36m|*_cp37m|*_cp27m|*_pypy36_pp73|*_cp38']
prometheus_client -> python -> python_abi[version='3.6|3.6.*|3.8.*|3.7.*',build='*_cp37m|*_cp36m|*_pypy36_pp73|*_cp38']
sphinxcontrib-jsmath -> python[version='>=3.5'] -> python_abi==3.6[build=*_pypy36_pp73]
backports.weakref -> python_abi[version='2.7.*|3.7.*|3.8.*|3.6|3.6.*',build='*_cp36m|*_pypy36_pp73|*_cp27m|*_cp37m|*_cp38']
pycosat -> python_abi[version='2.7.*|3.6|3.8.*|3.6.*|3.7.*',build='*_cp37m|*_cp36m|*_pypy36_pp73|*_cp27m|*_cp38']
tblib -> python -> python_abi==3.6[build=*_pypy36_pp73]
watchdog -> pyyaml[version='>=3.10'] -> python_abi[version='2.7.*|3.6|3.8.*|3.7.*|3.6.*',build='*_cp36m|*_pypy36_pp73|*_cp27m|*_cp38|*_cp37m']
heapdict -> python -> python_abi==3.6[build=*_pypy36_pp73]
dask -> bokeh[version='>=1.0.0,!=2.0.0'] -> python_abi[version='3.6.*|3.6|3.7.*|3.8.*',build='*_cp36m|*_pypy36_pp73|*_cp37m|*_cp38']
astropy -> python_abi[version='3.6.*|3.7.*|3.8.*',build='*_cp36m|*_cp37m|*_cp38']
backports.functools_lru_cache -> python -> python_abi[version='3.6.*|3.6|3.8.*|3.7.*',build='*_cp36m|*_cp37m|*_pypy36_pp73|*_cp38']
astroid -> python_abi[version='3.6.*|3.8.*|3.7.*',build='*_cp37m|*_cp36m|*_cp38']
bkcharts -> numpy[version='>=1.7.1'] -> python_abi[version='3.6.*|3.6|3.7.*|3.8.*',build='*_cp36m|*_pypy36_pp73|*_cp37m|*_cp38']
jupyterlab -> python[version='>=3.5'] -> python_abi[version='2.7.*|3.6.*|3.6|3.8.*|3.7.*',build='*_cp27m|*_cp37m|*_cp36m|*_pypy36_pp73|*_cp38']
sortedcollections -> python -> python_abi==3.6[build=*_pypy36_pp73]
ptyprocess -> python -> python_abi==3.6[build=*_pypy36_pp73]
joblib -> python -> python_abi[version='3.6.*|3.6|3.8.*|3.7.*',build='*_cp36m|*_cp37m|*_pypy36_pp73|*_cp38']
conda[version='>=4.8.3'] -> python_abi[version='2.7.*|3.6|3.6.*|3.8.*|3.7.*',build='*_cp37m|*_cp27m|*_pypy36_pp73|*_cp36m|*_cp38']
numba -> llvmlite[version='>=0.31.0,<0.32.0a0'] -> python_abi[version='2.7.*|3.6.*|3.6|3.8.*|3.7.*',build='*_cp37m|*_cp27m|*_cp36m|*_pypy36_pp73|*_cp38']
pytest-doctestplus -> numpy[version='>=1.10'] -> python_abi[version='3.6.*|3.6|3.7.*|3.8.*',build='*_cp36m|*_pypy36_pp73|*_cp37m|*_cp38']
psutil -> python_abi[version='2.7.*|3.6|3.6.*|3.8.*|3.7.*',build='*_cp27m|*_cp37m|*_pypy36_pp73|*_cp36m|*_cp38']
      Btw: running an alternative drug susceptibility tool in the command-line version (Mykrobe) works like a charm. (https://github.com/Mykrobe-tools/mykrobe)

      Comment

      • kdewa
        Junior Member
        • Apr 2020
        • 4
        #4
        Sorry for the late reply. I executed the commands you suggested, to no avail, if afterwards I retry installing/running TB-Profiler.

        I got the following when executing the commands: Warning: 'defaults'/'conda-forge'/'bioconda' already in 'channels' list, moving to the top

        Just to give an idea of the kind of error I'm running into, beneath is a longer of the list of incompatibilities (complete list is totaling over 250 pages in a Word document):

        Any suggestions? Can I do a clean install of all python libraries? What command should I use for that? (I find many possibilities online)

        Code:
        The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package libcxx conflicts for:
pywavelets -> numpy[version='>=1.14.6,<2.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
ujson -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0']
python-libarchive-c -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
numpy -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=9.0.0|>=9.0.1']
matplotlib-base -> python[version='>=3.6,<3.7.0a0'] -> libcxx
ipython -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
fsspec -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
sphinxcontrib-websupport -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
hdf5 -> libcxx[version='>=4.0.1|>=9.0.0']
cytoolz -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pandocfilters -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
gmp -> libcxx[version='>=4.0.1|>=9.0.1']
nbconvert -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
future -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
terminado -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
expat -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
h5py -> hdf5[version='>=1.10.5,<1.10.6.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
anaconda==2020.02 -> blosc==1.16.3=hd9629dc_0 -> libcxx[version='>=4.0.1']
jupyter_core -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
sphinxcontrib-jsmath -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
anaconda==2020.02 -> libcxx==4.0.1=hcfea43d_1
fastcache -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
imageio -> numpy -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
importlib_metadata -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
tornado -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
glob2 -> python=3.6 -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
ipython_genutils -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
backports -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
flask -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pip -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
locket -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pytest-openfiles -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
unixodbc -> libcxx[version='>=4.0.1']
pycrypto -> python[version='>=3.7,<3.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
numexpr -> python[version='>=3.6,<3.7.0a0'] -> libcxx
python-jsonrpc-server -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pyzmq -> python[version='>=3.6,<3.7.0a0'] -> libcxx
urllib3 -> python=3.6 -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
rtree -> libspatialindex[version='>=1.9.3,<1.9.4.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
dask -> numpy[version='>=1.13.0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
ujson -> libcxx[version='>=9.0.1']
greenlet -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
bkcharts -> numpy[version='>=1.7.1'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
py-lief -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=9.0.1']
qtawesome -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pygments -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pyparsing -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
clyent -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pytest -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
scikit-learn -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
alabaster -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pyodbc -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
openpyxl -> python=3.6 -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
keyring -> python[version='>=3.7,<3.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
webencodings -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pyflakes -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
numpy-base -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
matplotlib-base -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pytest-astropy-header -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
spyder -> pyqt[version='>=5.6,<5.13'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
python=3.7 -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
chardet -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
yaml -> libcxx[version='>=9.0.0']
ipykernel -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
msgpack-python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
applaunchservices -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
jupyter_client -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
tb-profiler -> bedtools -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
libcurl -> krb5[version='>=1.16.4,<1.17.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0']
atomicwrites -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
setuptools -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
qdarkstyle -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
flake8 -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
tblib -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
zict -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pytest-astropy -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
spyder-kernels -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
networkx -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pillow -> libtiff[version='>=4.1.0,<5.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
diff-match-patch -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
jinja2 -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
seaborn -> matplotlib-base[version='>=2.1.2'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
libtiff -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
jedi -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
gettext -> libffi[version='>=3.2.1,<3.3.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1']
pycosat -> python[version='>=2.7,<2.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
libffi -> libcxx[version='>=4.0.1|>=9.0.1']
cython -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pyqt -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=9.0.1']
mpfr -> gmp[version='>=6.1.2,<7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1']
yapf -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pandas -> python[version='>=3.6,<3.7.0a0'] -> libcxx
pylint -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
tqdm -> python=3.6 -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
heapdict -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
sqlalchemy -> python[version='>=2.7,<2.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
libgfortran -> llvm-openmp[version='>=8.0.0'] -> libcxx[version='>=4.0.1']
path -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
appscript -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
bokeh -> numpy[version='>=1.11.3'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
backports.shutil_get_terminal_size -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
wrapt -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
sphinx -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
mistune -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
mpc -> gmp[version='>=6.1.2,<7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1']
navigator-updater -> pyqt[version='>=5.6'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
wheel -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
qtconsole -> pyqt -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
docutils -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
nbformat -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
patsy -> numpy[version='>=1.4.0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
glib -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
soupsieve -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
snowballstemmer -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
msgpack-python -> python[version='>=3.6,<3.7.0a0'] -> libcxx
psutil -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
kiwisolver -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
babel -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
conda-package-handling -> python[version='>=3.7,<3.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
requests -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pathtools -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
qt -> libcxx[version='>=4.0.1|>=9.0.1']
bottleneck -> numpy[version='>=1.14.6,<2.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
filelock -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
lz4-c -> libcxx[version='>=4.0.1']
pytz -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
libedit -> ncurses[version='>=6.1,<6.2.0a0'] -> libcxx[version='>=4.0.1']
notebook -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
mock -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
hdf5 -> openmpi[version='>=4.0,<4.1.0a0'] -> libcxx[version='>=9.0.1']
pathlib2 -> python[version='>=3.7,<3.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pycurl -> python[version='>=3.7,<3.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
json5 -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pexpect -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
unicodecsv -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
py-lief -> libcxx[version='>=4.0.1|>=9.0.0']
prompt_toolkit -> python[version='>=3.6'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
et_xmlfile -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
scipy -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
matplotlib -> libcxx[version='>=4.0.1']
llvmlite -> libllvm8[version='>=8.0.1,<8.1.0a0'] -> libcxx[version='>=4']
pep8 -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
xlwings -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
gevent -> python=3.6 -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
liblief -> libcxx[version='>=4.0.1|>=9.0.0']
krb5 -> libcxx[version='>=4.0.1|>=9.0.0']
python-language-server -> python[version='>=3.7,<3.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pytables -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
sqlite -> libcxx[version='>=4.0.1']
cryptography -> python[version='>=2.7,<2.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
click -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
conda-build -> py-lief -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
toolz -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
html5lib -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
mkl_fft -> libcxx[version='>=4.0.1']
xmltodict -> python=3.6 -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
dask-core -> python[version='>=3.6'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
astroid -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pycparser -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
autopep8 -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
beautifulsoup4 -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pyqt -> libcxx[version='>=4.0.1|>=9.0.0']
jsonschema -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
sphinxcontrib-devhelp -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
mkl_random -> libcxx[version='>=4.0.1|>=9.0.0']
sympy -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pcre -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
decorator -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
dbus -> expat[version='>=2.2.5,<2.3.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
multipledispatch -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
sortedcollections -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pandas -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pytest-doctestplus -> numpy[version='>=1.10'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
samtools==1.9=h7c4ea83_11 -> ncurses[version='>=6.1,<6.2.0a0'] -> libcxx[version='>=4.0.1']
pydocstyle -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
xlrd -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
cffi -> libffi[version='>=3.2.1,<3.3.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
sphinxcontrib-applehelp -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
rope -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
conda[version='>=4.8.2'] -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
mkl_random -> python[version='>=3.7,<3.8.0a0'] -> libcxx[version='>=9.0.1']
cython -> python[version='>=3.6,<3.7.0a0'] -> libcxx
zipp -> python[version='>=3.6'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
olefile -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
ncurses==6.1=h0a44026_1002 -> libcxx[version='>=4.0.1']
itsdangerous -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
pyyaml -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
joblib -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
blosc -> libcxx[version='>=4.0.1|>=9.0.1']
sip -> libcxx[version='>=4.0.1|>=9.0.0']
scikit-image -> matplotlib-base[version='>=2.0.0'] -> libcxx[version='>=9.0.1']
pickleshare -> python[version='>=2.7,<2.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
jupyter_console -> python[version='>=3.5'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
icu -> libcxx[version='>=4.0.1']
colorama -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
asn1crypto -> python[version='>=3.6,<3.7.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
backports.functools_lru_cache -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
kiwisolver -> python[version='>=3.6,<3.7.0a0'] -> libcxx
pysocks -> python[version='>=2.7,<2.8.0a0'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
astropy -> numpy[version='>=1.16'] -> libcxx[version='>=4.0.1|>=9.0.1|>=9.0.0']
qtpy -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
attrs -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
anaconda-client -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
libxslt -> icu[version='>=64.2,<65.0a0'] -> libcxx[version='>=4.0.1']
jupyter -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
packaging -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
backports.tempfile -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
six -> python -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']
tbb -> libcxx[version='>=4.0.1|>=9.0.0']
sphinxcontrib -> python[version='>=3.8,<3.9.0a0'] -> libcxx[version='>=4.0.1|>=9.0.0|>=9.0.1']

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