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  • fjkvfhjkgjkkhfdsd
    Junior Member
    • May 2020
    • 6

    Database containing links between PubMed-Publications and Gene Names

    Does a database exist which contains links between PubMed-Publications and Gene Names? Use Case: I want to find all relevant PubMed-Publications (PubMed-Ids) for a specific Gene Name. Many thanks and best regards.
  • fjkvfhjkgjkkhfdsd
    Junior Member
    • May 2020
    • 6

    #2
    Example: Get all publications for Cdc45 (ENSMUSG00000000028)

    Comment

    • GenoMax
      Senior Member
      • Feb 2008
      • 7142

      #3
      You can check Entrezdirect from NCBI. Use it to do pubmed database searches like this.

      Code:
       esearch -db pubmed -query "CDC45 [GENE]" | efetch -format abstract

      Comment

      • fjkvfhjkgjkkhfdsd
        Junior Member
        • May 2020
        • 6

        #4
        Is it also possible to do the query as HTTP request?
        Many Thanks.

        Comment

        • GenoMax
          Senior Member
          • Feb 2008
          • 7142

          #5
          Yes it should be possible. Take a look at this page.

          Comment

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