Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • dicty
    Member
    • Nov 2010
    • 28

    #1

    galaxy question

    Hi,

    I installed galaxy in my local server, then I tried to upload a 4.7 Gb fastq file into galaxy, but failed. Below is the error message.

    OverflowError: signed integer is greater than maximum

    How could I upload large data files into galaxy and process the data?

    Thanks,

    Dicty
  • maubp
    Peter (Biopython etc)
    • Jul 2009
    • 1544

    #2
    You'll probably get an answer here first...

    Comment

    • nilshomer
      Nils Homer
      • Nov 2008
      • 1283

      #3
      Originally posted by maubp View Post
      You'll probably get an answer here first...
      http://lists.bx.psu.edu/pipermail/ga...ch/004579.html
      That's awesome.

      Comment

      • dawe
        Senior Member
        • Apr 2009
        • 258

        #4
        Originally posted by dicty View Post
        OverflowError: signed integer is greater than maximum
        What's the output of
        Code:
        $ file `which python`
        d

        Comment

        • tnabtaf
          Member
          • Jan 2011
          • 53

          #5
          This was resolved off-list.

          This problem happens when using HTTP instead of FTP for a file this large.

          Comment

          Latest Articles

          Collapse

          • SEQadmin2
            New Genomics Technologies Take Aim at Long-Standing Limits
            by SEQadmin2


            Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

            We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
            ...
            09-28-2026, 10:25 AM
          • SEQadmin2
            How Immunogenomics Decodes Immunity’s Genetic Blueprint
            by SEQadmin2




            The immune system’s power comes from its genetic diversity, allowing myriad threats to be neutralized through first recognizing foreign antigens. That diversity is also what makes the immune system so difficult to study. Recent advances in sequencing technology and computational biology, however, are giving researchers new tools to understand immune responses and immune-related diseases in greater detail.

            This convergence of genetics, immunology, and computation...
            09-01-2026, 05:41 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by SEQadmin2, Yesterday, 09:51 AM
          0 responses
          11 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 09-25-2026, 09:06 AM
          0 responses
          34 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 09-23-2026, 11:05 AM
          0 responses
          28 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 09-18-2026, 11:37 AM
          1 response
          48 views
          0 reactions
          Last Post pekgio
          by pekgio
           
          Working...