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  • dorita
    Junior Member
    • Jan 2021
    • 1
    #1

    Alligning assembled genomes to reference

    Dear All,
    I am looking for the right bioinformatics software to compare assembled genomes to each other and to the reference genome. I want to highlight differences in assemblies, SV etc. Can you please advice on this please?
    Thank you
    Tags: None
    • GenoMax
      Senior Member
      • Feb 2008
      • 7142
      #2
      If these are prokarotic genomes them Mauve will work. If these are larger eukaryotic genomes them tools like Mugsy or MUMMER4 may be more appropriate.

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