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  • scami
    Member
    • Sep 2010
    • 55
    #1

    SOAPdenovo v1.05

    Hi All,

    I am testing the new version of SOAPdenvo and I obtained some strange result. By using exactely the same dataset, configuration file and parameters I have the following statistics on the contig file for the version 1.04:

    N50 = 1750
    contig = 514836
    length = 336705343
    max contig length = 36963
    mean length = 654.005048209527

    On the other hand, by using the new SOAPdenovo31mer (v1.05) released a couple of weeks ago I get the following statistics:

    N50 = 1653
    contig = 536569
    length = 331410443
    max contig length = 36324
    mean length = 617.647391109065


    Is it possible that the new version performs worse than the previous one? Am I mistaking anything?

    any help is really appreciated!
    Tags: None
    • 75mph
      Junior Member
      • Jan 2013
      • 3
      #2
      I wanna help you, but I really cannot, I am really completely new in this area. I also need your help.

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