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  • ercfrtz
    Member
    • Aug 2010
    • 23

    TopHat Checking for Bowtie [Failed]

    I currently have bowtie0.12.5 installed and tophat1.2.0 and all the bowtie commands asked for are in the PATH. But when I try to run tophat, it says it can't find bowtie. Is it looking for a different version? Any help would be great. Thanks.
  • ttnguyen
    Member
    • Mar 2010
    • 41

    #2
    TopHat1.2.0 requires Bowtie 0.12.3 or later, but I would suggest to use the latest version of bowtie: 0.12.7

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