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how to import my own genome sequence into SeqMonk?

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  • #16
    No, the error is still the same.
    Actually I did use that option before (I always left it blank)...

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    • #17
      Originally posted by chris202 View Post
      No, the error is still the same.
      Actually I did use that option before (I always left it blank)...
      OK, maybe there's something else broken in there. I'll have a go myself and get back to you.

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      • #18
        Originally posted by chris202 View Post
        No, the error is still the same.
        Actually I did use that option before (I always left it blank)...
        I've had a play with the options here to see if I can reproduce this and I've not managed to break it. I've added some better error reporting to the code so could I ask if you could try this development snapshot to see if the problem still occurs, and if so then what the error you get is.

        If it still fails with the same nonsensiscal errors then could you send me a bit of the file which is failing to import and let me know which assembly you're using so I can reproduce it here and get to the bottom of what's failing.

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        • #19
          Originally posted by simonandrews View Post
          I've had a play with the options here to see if I can reproduce this and I've not managed to break it. I've added some better error reporting to the code so could I ask if you could try this development snapshot to see if the problem still occurs, and if so then what the error you get is.

          If it still fails with the same nonsensiscal errors then could you send me a bit of the file which is failing to import and let me know which assembly you're using so I can reproduce it here and get to the bottom of what's failing.
          I've used the new version but the problem is still the same.
          I can send you a piece of my dataset, however I use a custom built genome, i can send you the gff file also. Do you have a more private address than here ?

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          • #20
            Originally posted by chris202 View Post
            I've used the new version but the problem is still the same.
            I can send you a piece of my dataset, however I use a custom built genome, i can send you the gff file also. Do you have a more private address than here ?
            Thanks Chris. Drop me an email to [email protected] and we can work out the details.

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