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  • empyrean
    Member
    • Sep 2010
    • 52

    Blast table format hsp alignment !!

    Hello..

    Code:
    GRMZM2G5555   GRMZM2G5555   100.00  5197    0       0       2886    8082    2886    8082    0.0     9880
    GRMZM2G5555   GRMZM2G5555   100.00  1418    0       0       1       1418    1       1418    0.0     2769
    GRMZM2G5555   GRMZM2G5555   100.00  1377    0       0       1445    2821    1445    2821    0.0     2688
    GRMZM2G5555   GRMZM2G3333   99.13   1268    9       2       1445    2711    759     2025    0.0     2369
    GRMZM2G5555   GRMZM2G3333   99.17   724     6       0       687     1410    1       724     0.0     1388
    GRMZM2G5555   GRMZM2G2222   95.73   1310    23      8       4045    5333    647     1944    0.0     2068
    GRMZM2G5555   GRMZM2G1111   96.41   668     15      5       4677    5342    8063    7403    0.0     1031
    GRMZM2G5555   GRMZM2G1111   95.52   67      3       0       5428    5494    3703    3637    1e-21    109
    I have the blast table format output. i did blast on fasta with the same fasta. So the first hit will be itself. now the blast output is providing in different hsp's. But i wanted all the hsp's to be combined and display as one so that i can find the whole coverage of subject on query. Can anyone suggest me how to achieve this or a place to find the scripts for this problem.

    thanks

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