Hello..
I have the blast table format output. i did blast on fasta with the same fasta. So the first hit will be itself. now the blast output is providing in different hsp's. But i wanted all the hsp's to be combined and display as one so that i can find the whole coverage of subject on query. Can anyone suggest me how to achieve this or a place to find the scripts for this problem.
thanks
Code:
GRMZM2G5555 GRMZM2G5555 100.00 5197 0 0 2886 8082 2886 8082 0.0 9880 GRMZM2G5555 GRMZM2G5555 100.00 1418 0 0 1 1418 1 1418 0.0 2769 GRMZM2G5555 GRMZM2G5555 100.00 1377 0 0 1445 2821 1445 2821 0.0 2688 GRMZM2G5555 GRMZM2G3333 99.13 1268 9 2 1445 2711 759 2025 0.0 2369 GRMZM2G5555 GRMZM2G3333 99.17 724 6 0 687 1410 1 724 0.0 1388 GRMZM2G5555 GRMZM2G2222 95.73 1310 23 8 4045 5333 647 1944 0.0 2068 GRMZM2G5555 GRMZM2G1111 96.41 668 15 5 4677 5342 8063 7403 0.0 1031 GRMZM2G5555 GRMZM2G1111 95.52 67 3 0 5428 5494 3703 3637 1e-21 109
thanks