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  • rwenang
    Member
    • Jan 2009
    • 31

    #1

    Data Format Question

    Hello all,

    I happen to encounter samples of data which format I cannot identify (probably because I'm new in this area). The data looks like this:

    ------------------------------------------------------------------------
    31032008-GA001-R00046-GAR 1 279 634 859 CTCAACTAGTAATAGCACATGGAAAAACACAGACTA [[[[[[[\[[\[[[[[[[[[[FD[RZZXYXPQPGQN chr10.fa 98490 R 33A2 2

    31032008-GA001-R00046-GAR 1 196 855 131 ATAAAAGAAAAAACAACAAAAAAACAAAACAAAACA [NY[[[MWVMWY[JR[TQNYQSUYHVTIQIKKAGKI chr10.fa 103071 R 1A4A25CT2 0

    11042008-GA001-R00048-GAR 1 274 610 540 TAGAACCATGAGCCAATGAAACCTATTTCCT [[[[[[[[[[[[[[[[[[[[[[[[[[[[[[X chr10.fa 92373 R 31 3

    ------------------------------------------------------------------------

    Does anyone knows what format is the sequence data written, and where can I find the specification.

    Thanks.
  • Chipper
    Senior Member
    • Mar 2008
    • 323

    #2
    Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

    Comment

    • rwenang
      Member
      • Jan 2009
      • 31

      #3
      Thanks a lot Chipper

      Comment

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