Krona Tools - ktImportXML

GSviral

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Join Date: Dec 2014

Posts: 38
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Krona Tools - ktImportXML

06-22-2021, 04:53 AM

Hey everyone,

I'm performing a taxonomic analysis on a variety of samples and would like to view the output as a Krona chart.

I have performed a taxonomic analysis via a local BLAST nucleotide database set up on our Linux machine. Using this, I am outputting the results as an XML file so I can input it into MEGAN.

As I understand it this XML file should be able to feed into Krona Tools via the ktImportXML command.

However, when I do this and try to load the resulting HTML report it loads up on Firefox but displays a blank white screen, no chart in sight.

Does anyone have any advice on how to generate the chart properly?

Cheers!
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