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**myshu** · 11-11-2015, 07:41 PM

I have the problem as below :

cd lib && make
make[1]: Entering directory `/analysis/software_han/blatSrc/lib'
ar rcus x86_64/jkweb.a aliType.o annoAssembly.o annoFilter.o annoFormatter.o annoFormatTab.o annoGrator.o annoGrateWig.o annoGratorQuery.o annoOption.o annoRow.o annoStreamer.o annoStreamBigBed.o annoStreamBigWig.o annoStreamTab.o annoStreamVcf.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dyOut.o dystring.o elmTree.o emblParse.o errCatch.o errAbort.o fa.o ffAli.o ffScore.o fieldedTable.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fq.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o hex.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o hmac.o https.o intExp.o intValTree.o internet.o itsa.o iupac.o jointalign.o jpegSize.o jsonParse.o jsonWrite.o keys.o knetUdc.o kxTok.o linefile.o lineFileOnBigBed.o localmem.o log.o longToList.o maf.o mafFromAxt.o mafScore.o mailViaPipe.o md5.o memalloc.o memgfx.o meta.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o pairDistance.o paraFetch.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadDoList.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o raToStruct.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vcfBits.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[1]: Leaving directory `/analysis/software_han/blatSrc/lib'
cd jkOwnLib && make
make[1]: Entering directory `/analysis/software_han/blatSrc/jkOwnLib'
make[1]: `../lib/x86_64/jkOwnLib.a' is up to date.
make[1]: Leaving directory `/analysis/software_han/blatSrc/jkOwnLib'
cd blat && make
make[1]: Entering directory `/analysis/software_han/blatSrc/blat'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /home/myshu/bin/x86_64/blat blat.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a -pthread -L/usr/lib/x86_64-linux-gnu -lpng12 -lm
true /home/myshu/bin/x86_64/blat
make[1]: Leaving directory `/analysis/software_han/blatSrc/blat'
cd gfClient && make
make[1]: Entering directory `/analysis/software_han/blatSrc/gfClient'
gcc -O -g -o /home/myshu/bin/x86_64/gfClient gfClient.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a /usr/local/mysql/lib/libmysqlclient.a -lsocket -lnsl -lz -lstdc++ -lrt -lm -pthread -L/usr/lib/x86_64-linux-gnu -lpng12 -lm -lm
/usr/bin/ld: cannot find -lsocket
collect2: ld returned 1 exit status
make[1]: *** [/home/myshu/bin/x86_64/gfClient] Error 1
make[1]: Leaving directory `/analysis/software_han/blatSrc/gfClient'
make: *** [all] Error 2

can you help ?thank you!

**blancha** · 11-11-2015, 07:58 PM

Any reason you can't just download the executable, instead of trying to build the executable from the source code?

Here is the link for the executables, available for several platforms.

Index of /admin/exe

http://hgdownload.cse.ucsc.edu/admin/exe/

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