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  • NicoBxl
    not just another member
    • Aug 2010
    • 264

    #1

    IGV reverse strand gff

    Hi,

    I've to load a gff3 file in IGV. For the + strand entry it's ok but for the reverse strand entry, I can't see the exon. Here's an example of my gff file :

    Code:
    seqId	ensembl	mRNA	31592154	31588264	.	-	.	ID=ENSBTAG00000000008|ENSBTAT00000000008_0;Name=ENSBTAG00000000008|ENSBTAT00000000008
    seqId	ensembl	exon	31592154	31592115	.	-	.	ID=ENSBTAG00000000008|ENSBTAT00000000008_0_0;Name=ENSBTAG00000000008|ENSBTAT00000000008_0;Parent=ENSBTAG00000000008|ENSBTAT00000000008_0
    seqId	ensembl	exon	31589404	31588264	.	-	.	ID=ENSBTAG00000000008|ENSBTAT00000000008_0_1;Name=ENSBTAG00000000008|ENSBTAT00000000008_1;Parent=ENSBTAG00000000008|ENSBTAT00000000008_0
    The mRNA are well drawed but the exon aren't there ...

    Is my gff file ok?

    Thanks,

    N.
  • NicoBxl
    not just another member
    • Aug 2010
    • 264

    #2
    RESOLVED

    my gff file wasn't ok

    now it works

    Comment

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