I would like to identify each read of a smallRNAseq with a given genomic feature (e.g., exon, intron, repeat). I tried to use the BED to GFF tool in galaxy, and instead of a feature, I was given back the sequence of the interval for each BED entry. Does anyone have any alternative ways to do this?
-
-
This question is being discussed on the Galaxy-user mailing list. -
thanks...
but I am the same person that started that thread. I doubt the overlap between the two is 100% and figured it was quite small. All apologies for the redundancy.Comment
-
For future reference, you could include a link to any other mailing list so that people here on SeqAnswers are aware of the other potential solutions, and post back on the thread if you get a solution from the mailing list.Comment
-
The immune system’s power comes from its genetic diversity, allowing myriad threats to be neutralized through first recognizing foreign antigens. That diversity is also what makes the immune system so difficult to study. Recent advances in sequencing technology and computational biology, however, are giving researchers new tools to understand immune responses and immune-related diseases in greater detail.
This convergence of genetics, immunology, and computation...09-01-2026, 05:41 AM
Comment