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  • bioiion
    Junior Member
    • Apr 2011
    • 7

    #1

    Comparing NCBI36 and HuRef , Getting the contigs of HuRef ?

    I'm recently comparing two assembled genomes, NCBI36 and HuRef.
    There are datasets of insertion, deletion and duplication of HuRef compared to NCBI36.

    For example,
    insertion variation on chr7:13030 bp
    duplication variation on chr7:557764-558731 bp
    (genomic coordinates of NCBI36)

    1. Is there any way I can get the inserted sequence from HuRef?
    2. And genomic coordinate of HuRef where the inserted sequence is located?
    3. And If I know a genomic coordinate of HuRef, How can I get the contigs/sequences which were used to assemble HuRef genome?

    Thanks in advance.

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