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G1K have had pilot data up on their website for a few years now, but it appears that they still haven't published any genomes beyond the pilots. When I look at browser.1000genomes.org and display resequencing data, it shows sequence for the two pilot trios (6 genomes) and nothing more. Is that all there is?
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No, its not dead. Having heard about it at seminars and workshops, I think the answer is simply that may be all the data published so far. -
Not dead yet. But I presume hapmap is dead now???Comment
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1000 genomes really isn't dead look at both http://www.1000genomes.org and browser.1000genomes.org to see that
Hapmap has stopped producing new data and is no longer state of the art but the info is all still available from their websiteComment
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Differential Expression and Data Visualization: Recommended Tools for Next-Level Sequencing Analysis
After covering QC and alignment tools in the first segment and variant analysis and genome assembly in the second segment, we’re wrapping up with a discussion about tools for differential gene expression analysis and data visualization. In this article, we include recommendations from the following experts: Dr. Mark Ziemann, Senior Lecturer in Biotechnology and Bioinformatics, Deakin University; Dr. Medhat Mahmoud Postdoctoral Research Fellow at Baylor College of Medicine;...05-23-2023, 12:26 PM -
Continuing from our previous article, we share variant analysis and genome assembly tools recommended by our experts Dr. Medhat Mahmoud, Postdoctoral Research Fellow at Baylor College of Medicine, and Dr. Ming "Tommy" Tang, Director of Computational Biology at Immunitas and author of From Cell Line to Command Line.
Variant detection and analysis tools
Mahmoud classifies variant detection work into two main groups: short variants (<50...05-19-2023, 10:03 AM -
With new tools and computational resources being released regularly, it can be hard to determine which are best suited for the analysis process and which older tools continue to be maintained. In an effort to assist the sequencing community, we interviewed three highly skilled bioinformaticians about their recommended tools for several important analysis applications.
Quality control and preprocessing tools
“Garbage in, garbage out” is a popular...05-16-2023, 10:11 AM
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