Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • aligenie
    started a topic CASAVA 1.7 Install Help

    CASAVA 1.7 Install Help

    Hi everyone,

    I've been trying to install CASAVA 1.7 on Ubuntu 11 and I have an issue during configuration

    root@ali-iMac:/usr/local/CASAVA_v1.7.0/CASAVA_v1.7.0-build# /usr/local/CASAVA_v1.7.0/src/configure
    cmake version "cmake version 2.8.0" is already installed at /usr/local/CASAVA_v1.7.0/CASAVA_v1.7.0-build/bootstrap/bin/cmake
    nothing to be done
    Using installed /usr/local/CASAVA_v1.7.0/CASAVA_v1.7.0-build/bootstrap/bin/cmake
    -- The C compiler identification is GNU
    -- The CXX compiler identification is GNU
    -- Check for working C compiler: /usr/bin/gcc
    -- Check for working C compiler: /usr/bin/gcc -- works
    -- Detecting C compiler ABI info
    -- Detecting C compiler ABI info - done
    -- Check for working CXX compiler: /usr/bin/c++
    -- Check for working CXX compiler: /usr/bin/c++ -- works
    -- Detecting CXX compiler ABI info
    -- Detecting CXX compiler ABI info - done
    -- install prefix: /usr/local
    -- install exec prefix: .
    -- install bin dir: ./bin
    -- install lib dir: ./lib/CASAVA-1.7.0
    -- install libexec dir: ./libexec/CASAVA-1.7.0
    -- install include dir: include/CASAVA-1.7.0
    -- install data dir: share/CASAVA-1.7.0
    -- install doc dir: doc/CASAVA-1.7.0
    -- install man dir: man
    -- Verifying target directories access
    -- Creating external tools in subdirectory opt
    -- Could NOT find Boost
    -- Boost 1.41.0 not found. Boost will be built from the distribution...
    Decompressing /usr/local/CASAVA_v1.7.0/src/../redist/boost_1_41_0.tar.gz
    Building Boost.Jam with toolset gcc... tools/jam/src/bin.linuxx86_64/bjam
    Unicode/ICU support for Boost.Regex?... not found.
    Backing up existing Boost.Build configuration in project-config.jam.2
    Generating Boost.Build configuration in project-config.jam...

    Bootstrapping is done. To build, run:

    ./bjam

    To adjust configuration, edit 'project-config.jam'.
    Further information:

    - Command line help:
    ./bjam --help

    - Getting started guide:


    - Boost.Build documentation:


    warning: Building Boost.Regex with the optional Unicode/ICU support disabled.
    note: Please refer to the Boost.Regex documentation for more information
    note: this is a strictly optional feature.
    ...patience...
    ...patience...
    ...found 16182 targets...
    ...updating 4 targets...
    gcc.compile.c++ bin.v2/libs/iostreams/build/gcc-4.5.2/release/link-static/threading-multi/bzip2.o
    gcc.archive bin.v2/libs/iostreams/build/gcc-4.5.2/release/link-static/threading-multi/libboost_iostreams.a
    common.copy /usr/local/CASAVA_v1.7.0/CASAVA_v1.7.0-build/opt/bootstrap/lib/libboost_iostreams.a
    ...updated 4 targets...
    boost-1_41_0 installed successfully
    -- Successfuly built boost 1.41.0 from the distribution package...
    -- Installing Post-Run Command Framework
    -- Check if the system is big endian
    -- Searching 16 bit integer
    -- Looking for sys/types.h
    -- Looking for sys/types.h - found
    -- Looking for stdint.h
    -- Looking for stdint.h - found
    -- Looking for stddef.h
    -- Looking for stddef.h - found
    -- Check size of unsigned short
    -- Check size of unsigned short - done
    -- Using unsigned short
    -- Check if the system is big endian - little endian
    -- Looking for floorf
    -- Looking for floorf - found
    -- Looking for round
    -- Looking for round - found
    -- Looking for roundf
    -- Looking for roundf - found
    -- Looking for powf
    -- Looking for powf - found
    -- Looking for erf
    -- Looking for erf - found
    -- Looking for erf
    -- Looking for erf - found
    -- Looking for erfc
    -- Looking for erfc - found
    -- Looking for erfc
    -- Looking for erfc - found
    CMake Error at cmake/cxxConfigure.cmake:71 (message):
    No support for gzip compression
    Call Stack (most recent call first):
    c++/CMakeLists.txt:30 (include)


    -- Configuring incomplete, errors occurred!
    Couldn't configure the project:

    /usr/local/CASAVA_v1.7.0/CASAVA_v1.7.0-build/bootstrap/bin/cmake -H"/usr/local/CASAVA_v1.7.0/src" -B"/usr/local/CASAVA_v1.7.0/CASAVA_v1.7.0-build" -G"Unix Makefiles" -DCASAVA_PREFIX:PATH= -DCASAVA_EXEC_PREFIX:PATH= -DCMAKE_INSTALL_PREFIX:PATH= -DCASAVA_BINDIR:PATH= -DCASAVA_LIBDIR:PATH= -DCASAVA_LIBEXECDIR:PATH= -DCASAVA_INCLUDEDIR:PATH= -DCASAVA_DATADIR:PATH= -DCASAVA_DOCDIR:PATH= -DCASAVA_MANDIR:PATH= -DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo

    Moving CMakeCache.txt to CMakeCache.txt.removed


    Can anyone tell what is going wrong?

    Thanks in advance!

    Ali

Latest Articles

Collapse

  • seqadmin
    Recent Advances in Sequencing Analysis Tools
    by seqadmin


    The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
    05-06-2024, 07:48 AM
  • seqadmin
    Essential Discoveries and Tools in Epitranscriptomics
    by seqadmin




    The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
    04-22-2024, 07:01 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 06:57 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-06-2024, 07:17 AM
0 responses
16 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-02-2024, 08:06 AM
0 responses
19 views
0 likes
Last Post seqadmin  
Started by seqadmin, 04-30-2024, 12:17 PM
0 responses
24 views
0 likes
Last Post seqadmin  
Working...
X