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Yes, i mean "mapping to a reference sequence" and i want to known some other programs designed for alignment of solid or 454 reads. -
If by "aligning" you mean "mapping to a reference sequence" then I would say that the company's offered software will be one of the best options. This is 'corona lite' for the Solid (works in color space!) and Newbler for 454.Originally posted by baohua100 View Post
For cross-platform mapping and/or assembly (i.e., mixing up 454 and SOLiD reads and expecting to obtain contigs from them) then neither of the above will work very well.Leave a comment:
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Alignment of ABI solid reads and 454 reads
Which programs suits aligning ABI solid reads most?
Which programs suits aligning 454 reads most?
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