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  • foolishbrat
    Member
    • Nov 2008
    • 45

    #1

    Two Version of Solexa Quality Score Formula

    Hi all,


    According to Solexa's Manual this

    Code:
    sQ = 10 log10(P/(1-P))
    P= probability of base call

    And according to Maq is this:

    Code:
    $sQ = -10 * log($e / (1 - $e)) / log(10);
    e = probability of base error


    Which one is the correct one?
    Last edited by foolishbrat; 03-08-2009, 05:27 PM.
  • -daf-
    Junior Member
    • Feb 2009
    • 6

    #2
    log10(x)=log(x)/log(10),
    e = 1 - P,
    log(x)=-log(1/x),
    ->Maq=Solexa

    Comment

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