sff_extract paired end extraction error

[coldturkey]

I have been trying to run sff_extract using the -l flag to
extract the paired end read from my sff file but I receive
the following error.

brian@Gaff[Pairedend_extract] sff_extract -o testrun -l
/home/brian/Neo_home/test/Pairedend_extract/LINKER/Linker.fasta
/home/brian/Neo_home/test/FE4758201.sff
[ 1:21PM]
Working on '/home/brian/Neo_home/test/FE4758201.sff':
Creating temporary sequences from reads in
'/home/brian/Neo_home/test/FE4758201.sff' ... done.
Searching linker sequences with SSAHA2 (this may take a
while) ... Input parameter error for "-solexa"


An error occured during the SSAHA2 execution, aborting.

I am unsure what exactly is causing the error as SSAHA2
works fine outside of sff_extract and sff_extract works perfectly
when not using the -l flag

regards

Brian

[BaCh]

Wrong version of ssaha, upgrade to one that knows the "-solexa" flag :-)

B.