VCF formated bovine SNPs
Does anybody know if and how I can access a list of all reported bovine SNPs in VCF format?
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Yes, vcf files can always be viewed from an editor. Check
http://samtools.sourceforge.net/mpileup.shtml
for what the columns mean.
HTH -
It is not vcf format, but maybe it helps, though:
The dbSNP Build 133 for cow (txid 9913) was recently announced on the dbSNP site
check the readme file here for all downloadable files.
cheers,
SophiaComment
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Cheers for the reply guys! It's looking like we're going to convert the files to .bed format instead
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