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  • naumenko.sa
    Junior Member
    • May 2011
    • 5

    #1

    abyss-pe on 30G ram crashed

    I tried to run abyss-pe for 8Gb short read fasta file
    on a machine with 32G of RAM.
    And it was not satisfied with memory size.

    The target genome size is not so big: about 200Mb.

    Any suggestions?
    In abyss manual it is written
    how to run many copies of abyss with different set
    of params on a set of nodes
    rather than how to run the abyss on many nodes.

    Thank you for any help.

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