I tried to run abyss-pe for 8Gb short read fasta file
on a machine with 32G of RAM.
And it was not satisfied with memory size.
The target genome size is not so big: about 200Mb.
Any suggestions?
In abyss manual it is written
how to run many copies of abyss with different set
of params on a set of nodes
rather than how to run the abyss on many nodes.
Thank you for any help.
on a machine with 32G of RAM.
And it was not satisfied with memory size.
The target genome size is not so big: about 200Mb.
Any suggestions?
In abyss manual it is written
how to run many copies of abyss with different set
of params on a set of nodes
rather than how to run the abyss on many nodes.
Thank you for any help.