A new tool released recently ~March 2012 is Mitofy http://dogma.ccbb.utexas.edu/mitofy/ for annotation of plant mitochondrial genomes.
And of course the corresponding tool for plastid genomes that has been available for a while is Dogma http://dogma.ccbb.utexas.edu/
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very useful Information for meOriginally posted by Joann View PostFor rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at
and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.
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new! International Society for Biocuration
For rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at
and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.Leave a comment:
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A list of available sequence annotation tools?
Hi, in reply to a thread here: http://seqanswers.com/forums/showthread.php?t=819 I think it would be great to share tools for annotation of assembled genomes. I have a particular interest in bacteria, but why not make a list of all available tools.
For bacteria I have tried the Manatee annotation service at JCVI:
Another tool which I do not have much experience with is The SEED:
http://www.theseed.org/wiki/Main_Page
Suggestion from RudyS: http://www.blast2go.org/
I would greatly appreciate all the links you can provide!Last edited by Stegger; 03-04-2009, 02:23 AM.
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