A new tool released recently ~March 2012 is Mitofy http://dogma.ccbb.utexas.edu/mitofy/ for annotation of plant mitochondrial genomes.
And of course the corresponding tool for plastid genomes that has been available for a while is Dogma http://dogma.ccbb.utexas.edu/
-
very useful Information for meOriginally posted by Joann View PostFor rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at
and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.
thanksLeave a comment:
-
new! International Society for Biocuration
For rapidly evolving, up to date focus on genome sequence annotation and comparative genomics, check out the 3rd International Biocuration Conference at
and do not hesitate to bring forward questions, ideas, suggestions and collaborative projects for all kinds of database annotation strategies.Leave a comment:
-
A list of available sequence annotation tools?
Hi, in reply to a thread here: http://seqanswers.com/forums/showthread.php?t=819 I think it would be great to share tools for annotation of assembled genomes. I have a particular interest in bacteria, but why not make a list of all available tools.
For bacteria I have tried the Manatee annotation service at JCVI:
Another tool which I do not have much experience with is The SEED:
Suggestion from RudyS: http://www.blast2go.org/
I would greatly appreciate all the links you can provide!Last edited by Stegger; 03-04-2009, 02:23 AM.
-
Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...04-04-2024, 04:25 PM -
Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...03-22-2024, 06:39 AM
Leave a comment: