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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,262 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
SRA-Toolkit 2.3.1 fastq-dump multiplefiles at once Windows command line by deepbiomed
Started by deepbiomed, 04-02-2013, 12:56 PM
6 responses
5,293 views
0 reactions
 Last Post deepbiomed
by deepbiomed
04-04-2013, 11:37 AM  
newbie BWA alignment question by Opusone
Started by Opusone, 04-04-2013, 09:51 AM
2 responses
1,442 views
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 Last Post MBekritsky
by MBekritsky
04-04-2013, 10:59 AM  
find areas of very low and extra high coverage in NGS data by willMD
Started by willMD, 03-29-2013, 08:29 AM
4 responses
2,609 views
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 Last Post willMD
by willMD
04-04-2013, 10:33 AM  
mergeBed -scores help by halo_ox
Started by halo_ox, 04-04-2013, 08:37 AM
3 responses
1,863 views
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 Last Post halo_ox
by halo_ox
04-04-2013, 09:00 AM  
MEGAN command line without X11? by kga1978
Started by kga1978, 07-27-2012, 01:26 PM
2 responses
4,141 views
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 Last Post yingzhang
by yingzhang
04-04-2013, 08:53 AM  
rare variant missing in the vcf file by crang
Started by crang, 04-02-2013, 06:35 AM
10 responses
3,140 views
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 Last Post crang
by crang
04-04-2013, 08:27 AM  
Cannot find NOME-Seq data by cutcopy11
Started by cutcopy11, 04-03-2013, 04:33 PM
2 responses
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 Last Post DNAase
by DNAase
04-04-2013, 08:13 AM  
Split Large FASTQ file in small FASTQ files with user defined number of reads Windows by deepbiomed
Started by deepbiomed, 04-04-2013, 06:15 AM
3 responses
8,148 views
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 Last Post maubp
by maubp
04-04-2013, 07:14 AM  
GATK filterExpression multiplication (*) mistaken for wildcard by tsecogen
Started by tsecogen, 03-30-2013, 09:18 AM
4 responses
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 Last Post tsecogen
by tsecogen
04-04-2013, 05:39 AM  
How likely is one region to be sequenced as two duplicates due to assembly error? by maimaiti2008
Started by maimaiti2008, 04-03-2013, 12:31 AM
2 responses
1,800 views
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 Last Post dpryan
by dpryan
04-04-2013, 05:08 AM  
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