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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
0 reactions
 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Pindel for MiSeq by handalab
Started by handalab, 11-09-2012, 07:09 AM
4 responses
3,717 views
0 reactions
 Last Post Buzz0r
by Buzz0r
12-10-2012, 03:48 AM  
Question on mapping quality and uniquely mapped read by chenyao
Started by chenyao, 08-31-2011, 02:59 AM
6 responses
6,584 views
0 reactions
 Last Post azi
by azi
12-10-2012, 03:18 AM  
RNA-seq expression measurements and tests by Rainbird
Started by Rainbird, 12-10-2012, 01:08 AM
3 responses
1,690 views
0 reactions
 Last Post dpryan
by dpryan
12-10-2012, 03:16 AM  
How to tag reads for alignment by meher
Started by meher, 11-16-2012, 05:11 AM
7 responses
2,114 views
0 reactions
 Last Post Apexy
by Apexy
12-10-2012, 02:45 AM  
Is there a way to view wiggle/bigWig in terminal by feeldead
Started by feeldead, 12-08-2012, 04:49 PM
3 responses
5,422 views
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 Last Post dariober
by dariober
12-10-2012, 12:16 AM  
extremely large vcf file generated by GATK by slowsmile
Started by slowsmile, 03-02-2012, 11:33 AM
2 responses
3,739 views
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 Last Post kissthefuture
by kissthefuture
12-09-2012, 09:23 PM  
Help with converting files to BEAGLE format by BW22
Started by BW22, 12-08-2012, 08:13 PM
1 response
3,647 views
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 Last Post NBlackburn
by NBlackburn
12-09-2012, 07:45 PM  
read group: GATK or BWA option? by m_elena_bioinfo
Started by m_elena_bioinfo, 02-01-2011, 01:16 AM
9 responses
17,074 views
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 Last Post prasadg
by prasadg
12-09-2012, 10:53 AM  
running GATK Queue script under PBS environment? by orionzhou
Started by orionzhou, 05-24-2011, 01:31 PM
1 response
2,583 views
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 Last Post severin
by severin
12-09-2012, 05:24 AM  
Scaffolding a highly repetitive genome by aharkess
Started by aharkess, 12-08-2012, 10:53 AM
1 response
2,119 views
0 reactions
 Last Post jimmybee
by jimmybee
12-08-2012, 06:05 PM  
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