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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
non tagged strain biases with HA antibodies by leeloo047
Started by leeloo047, 07-27-2012, 12:10 AM
0 responses
1,555 views
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 Last Post leeloo047
by leeloo047
07-27-2012, 12:10 AM  
EMBOSS help by yaximik
Started by yaximik, 07-26-2012, 08:49 AM
3 responses
1,596 views
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 Last Post AndrewC
by AndrewC
07-27-2012, 12:03 AM  
convert bam file to bedgraph format with inconsistent results by zhiqiang
Started by zhiqiang, 07-26-2012, 11:48 PM
0 responses
2,930 views
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 Last Post zhiqiang
by zhiqiang
07-26-2012, 11:48 PM  
bwa: “XT:A:U” and MAPQ of 0 at the same time by Tefina
Started by Tefina, 03-06-2012, 03:59 AM
6 responses
4,717 views
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 Last Post phatjoe
by phatjoe
07-26-2012, 11:19 PM  
question with cufflinks applying in bacteria by qqtwee
Started by qqtwee, 07-26-2012, 06:53 PM
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1,280 views
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 Last Post qqtwee
by qqtwee
07-26-2012, 06:53 PM  
Question about exon limits and annotation.. by shyam_la
Started by shyam_la, 07-25-2012, 02:38 PM
16 responses
3,407 views
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 Last Post shyam_la
by shyam_la
07-26-2012, 03:12 PM  
vcfutils to get consensus sequence by nupurgupta
Started by nupurgupta, 07-24-2012, 07:21 AM
3 responses
3,646 views
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 Last Post Balat
by Balat
07-26-2012, 03:05 PM  
fisher test, X test, Cramer’s V by joscarhuguet
Started by joscarhuguet, 07-26-2012, 12:41 PM
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 Last Post joscarhuguet
by joscarhuguet
07-26-2012, 12:41 PM  
cummeRbund ANDing in getSig by Starr_Hazard
Started by Starr_Hazard, 04-27-2012, 11:05 AM
9 responses
3,559 views
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 Last Post billstevens
by billstevens
07-26-2012, 12:29 PM  
How to remove the reads whose k-mers are more or less than an abundance threshold by Lisa0508
Started by Lisa0508, 07-24-2012, 04:53 AM
3 responses
4,288 views
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 Last Post seb567
by seb567
07-26-2012, 03:52 AM  
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