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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,262 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
finding SNPs from tophat bam output by lpn
Started by lpn, 03-01-2012, 10:29 AM
0 responses
1,464 views
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 Last Post lpn
by lpn
03-01-2012, 10:29 AM  
Quality trimming for RNA Seq by Noa
Started by Noa, 03-01-2012, 01:17 AM
5 responses
4,323 views
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 Last Post Noa
by Noa
03-01-2012, 10:12 AM  
Tophat complains by Assaf
Started by Assaf, 01-02-2012, 07:19 AM
1 response
1,992 views
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 Last Post Ambily
by Ambily
03-01-2012, 08:29 AM  
Quality values in ace file (CAP3, Newbler and MIRA) by aloliveira
Started by aloliveira, 03-01-2012, 04:35 AM
0 responses
1,598 views
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 Last Post aloliveira
by aloliveira
03-01-2012, 04:35 AM  
modify the flag field in SAM by Glouglou14
Started by Glouglou14, 03-01-2012, 03:39 AM
0 responses
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 Last Post Glouglou14
by Glouglou14
03-01-2012, 03:39 AM  
Dialign2-2 outputs by RTK45
Started by RTK45, 03-01-2012, 01:48 AM
1 response
1,907 views
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 Last Post RTK45
by RTK45
03-01-2012, 02:39 AM  
ins_length in velvet by kentk
Started by kentk, 03-01-2012, 02:37 AM
0 responses
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 Last Post kentk
by kentk
03-01-2012, 02:37 AM  
How to remove reads in wrong direction from Cufflinks analysis by Noa
Started by Noa, 03-01-2012, 02:21 AM
0 responses
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 Last Post Noa
by Noa
03-01-2012, 02:21 AM  
Software for identification of Trinity/Cufflinks transcripts by ifiddes
Started by ifiddes, 02-28-2012, 11:40 AM
5 responses
3,097 views
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 Last Post swaraj
by swaraj
03-01-2012, 12:57 AM  
meaning to XT:A(N;Mate-sw) in SAM by yangxz
Started by yangxz, 03-01-2012, 12:11 AM
0 responses
1,982 views
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 Last Post yangxz
by yangxz
03-01-2012, 12:11 AM  
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