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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Rsubread for miRNA by inah
Started by inah, 10-05-2016, 12:50 PM
1 response
2,928 views
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 Last Post Elfangor
by Elfangor
10-10-2016, 12:43 AM  
Trimmomatic settings for miRNA by mominchen
Started by mominchen, 10-06-2016, 06:22 AM
1 response
4,551 views
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 Last Post Elfangor
by Elfangor
10-10-2016, 12:34 AM  
running GATK or Mutect or a somatic variant caller individual chromosomes by bogdan
Started by bogdan, 02-09-2016, 05:41 PM
1 response
1,697 views
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 Last Post yueluo
by yueluo
10-08-2016, 11:49 PM  
Sorting fasta file according to header by zillur
Started by zillur, 10-06-2016, 10:06 AM
10 responses
5,275 views
0 reactions
 Last Post Persistent LABS
by Persistent LABS
10-07-2016, 11:53 PM  
sorting reads by edeka
Started by edeka, 10-05-2016, 02:51 AM
1 response
1,410 views
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 Last Post khericlim
by khericlim
10-07-2016, 12:43 PM  
DESeq factor design, and optimal number of samples by Lugalbanda
Started by Lugalbanda, 10-05-2016, 01:49 PM
5 responses
3,293 views
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 Last Post SylvainL
by SylvainL
10-07-2016, 12:50 AM  
GATK interval_list file header format and errors by AnushaC
Started by AnushaC, 06-25-2014, 04:16 PM
14 responses
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 Last Post QazSeDc
by QazSeDc
10-07-2016, 12:08 AM  
Question about GC Skew color label in BRIG (Blast Ring Image Generator) by ambarishnag
Started by ambarishnag, 10-06-2016, 04:32 PM
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 Last Post ambarishnag
by ambarishnag
10-06-2016, 04:32 PM  
Sorting of fasta file according to gene name in alphabetical order by garethboy
Started by garethboy, 01-06-2014, 12:46 AM
9 responses
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 Last Post SNPsaurus
by SNPsaurus
10-06-2016, 02:59 PM  
2 treatments and 1 control, a three way normalization for cufflink output by vrutantshah
Started by vrutantshah, 10-06-2016, 01:44 PM
0 responses
4,090 views
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 Last Post vrutantshah
by vrutantshah
10-06-2016, 01:44 PM  
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