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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
0 reactions
 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
htseq-count error RNAME == '*' although flag bit &0x0004 cleared" by super0925
Started by super0925, 04-29-2016, 03:01 AM
7 responses
2,779 views
0 reactions
 Last Post super0925
by super0925
04-30-2016, 10:16 AM  
DESeq with FPKM values by frymor
Started by frymor, 04-24-2015, 03:10 AM
12 responses
10,310 views
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 Last Post dpryan
by dpryan
04-29-2016, 12:29 PM  
100% reads passed chastity filtering? by savernake
Started by savernake, 04-26-2016, 08:11 AM
6 responses
4,111 views
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 Last Post GenoMax
by GenoMax
04-29-2016, 09:30 AM  
pbl to run hisat2 on a computer cluster with hg19 by ebe
Started by ebe, 04-29-2016, 02:14 AM
4 responses
3,209 views
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 Last Post GenoMax
by GenoMax
04-29-2016, 07:17 AM  
Assembler for denovo metagenomes by Holinder
Started by Holinder, 05-11-2015, 11:37 PM
14 responses
6,301 views
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 Last Post marianalozada
by marianalozada
04-29-2016, 04:25 AM  
how to use centopede by Aldnoah
Started by Aldnoah, 04-29-2016, 12:20 AM
0 responses
1,360 views
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 Last Post Aldnoah
by Aldnoah
04-29-2016, 12:20 AM  
Neandertal Genes by mikeusyk
Started by mikeusyk, 04-28-2016, 01:18 PM
1 response
1,143 views
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 Last Post GenoMax
by GenoMax
04-28-2016, 01:49 PM  
GIREMI RNA editing by RikyJKD
Started by RikyJKD, 04-28-2016, 12:30 PM
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 Last Post RikyJKD
by RikyJKD
04-28-2016, 12:30 PM  
Gene symbol to GO terms(MF,BP and CC) by dawn1313
Started by dawn1313, 04-28-2016, 09:49 AM
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 Last Post dawn1313
by dawn1313
04-28-2016, 09:49 AM  
Redirect: PacBio fastq and VICUNA by Mesmer
Started by Mesmer, 04-28-2016, 07:46 AM
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  • kinpict.com
    Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
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    The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
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  • SEQadmin2
    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by SEQadmin2





    NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
    10-30-2026, 06:46 AM
  • SEQadmin2
    Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
    by SEQadmin2



    Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

    Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating    ...
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by SEQadmin2
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