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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Does MUMmer reorder the query sequences? by antifolate
Started by antifolate, 12-17-2015, 12:41 PM
0 responses
1,916 views
0 reactions
 Last Post antifolate
by antifolate
12-17-2015, 12:41 PM  
SOS with samtools tview by Micifuz
Started by Micifuz, 12-17-2015, 10:59 AM
3 responses
1,425 views
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 Last Post GenoMax
by GenoMax
12-17-2015, 11:39 AM  
Minia-genome assembler by bioman1
Started by bioman1, 07-22-2014, 07:50 PM
5 responses
2,598 views
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 Last Post rchikhi
by rchikhi
12-17-2015, 05:48 AM  
SOAPdenovo analysis by francism
Started by francism, 12-17-2015, 03:12 AM
3 responses
1,384 views
0 reactions
 Last Post GenoMax
by GenoMax
12-17-2015, 04:47 AM  
SNP call by samtools, but ALT is "X" QUAL is "0" by illuminaGA
Started by illuminaGA, 12-16-2015, 01:31 PM
1 response
1,819 views
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 Last Post dpryan
by dpryan
12-17-2015, 12:25 AM  
eEtting up DESeq 2 analysis by andrewelamb
Started by andrewelamb, 12-14-2015, 10:12 AM
7 responses
1,802 views
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 Last Post dpryan
by dpryan
12-16-2015, 11:51 AM  
CatchAll to calculate species abundance by morning latte
Started by morning latte, 12-16-2015, 08:50 AM
0 responses
1,255 views
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 Last Post morning latte
by morning latte
12-16-2015, 08:50 AM  
Getting coverage of each contig from velvet output by antifolate
Started by antifolate, 12-15-2015, 07:31 PM
0 responses
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 Last Post antifolate
by antifolate
12-15-2015, 07:31 PM  
Install dwgsim problem - location of samtools binaries error by swNGS
Started by swNGS, 08-17-2012, 12:53 AM
9 responses
5,400 views
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 Last Post shangjin
by shangjin
12-15-2015, 07:29 PM  
Alternative to SNAP (Broad) for finding SNPs in LD to initial set? by albireo
Started by albireo, 08-21-2014, 07:13 AM
1 response
3,982 views
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 Last Post chrisedlund
by chrisedlund
12-15-2015, 03:54 PM  
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