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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
surprisingly hard: Going from Genbank Accession number to Genome Name by berthubert
Started by berthubert, 01-25-2014, 07:51 AM
4 responses
3,114 views
0 reactions
 Last Post berthubert
by berthubert
01-25-2014, 12:17 PM  
how to create mat file for genemark by bio_informatics
Started by bio_informatics, 01-25-2014, 11:58 AM
0 responses
2,213 views
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 Last Post bio_informatics
by bio_informatics
01-25-2014, 11:58 AM  
Converting EST2genome file format to BED file format? by atape
Started by atape, 01-25-2014, 03:05 AM
0 responses
1,606 views
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 Last Post atape
by atape
01-25-2014, 03:05 AM  
[Trinity protocol] some question about step: quality assessment by bongbimit
Started by bongbimit, 01-23-2014, 02:35 AM
4 responses
2,542 views
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 Last Post bongbimit
by bongbimit
01-24-2014, 06:57 PM  
DESeq estimation of dispertion pooled CR by raphael123
Started by raphael123, 01-24-2014, 02:22 PM
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 Last Post raphael123
by raphael123
01-24-2014, 02:22 PM  
Why not variant call before pileup? by obk
Started by obk, 01-23-2014, 02:59 PM
6 responses
1,974 views
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 Last Post SNPsaurus
by SNPsaurus
01-24-2014, 02:13 PM  
sequence coverage format trouble by OTU
Started by OTU, 01-23-2014, 02:02 PM
4 responses
1,671 views
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 Last Post GenoMax
by GenoMax
01-24-2014, 11:53 AM  
Consensus from mpileup for haploid sequences (forcing base calls - no ambiguities) by ericarcher
Started by ericarcher, 09-25-2011, 11:36 AM
6 responses
6,460 views
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 Last Post rcapper
by rcapper
01-24-2014, 09:52 AM  
Error in ExomeCNV running by croshong
Started by croshong, 01-24-2014, 08:10 AM
0 responses
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 Last Post croshong
by croshong
01-24-2014, 08:10 AM  
how to specify path to precalculated bwa index files? by mcnach
Started by mcnach, 01-24-2014, 06:47 AM
2 responses
4,515 views
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 Last Post mcnach
by mcnach
01-24-2014, 07:14 AM  
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