Dear all,
We are excited to announce that registration is now open for the new edition of the online live course "Manipulation of NGS Data for Genomic and Population Genetics Analyses" taught by François Sabot and Julie Orejuela on June 5-14th, 2024.
More information and registration on the course webpage: https://www.transmittingscience.com/...tics-analyses/
The course programme includes:
Best regards,
Ana
Ana Rosa Gómez Cano, PhD.
Transmitting Science Communication Manager
[email protected]
We are excited to announce that registration is now open for the new edition of the online live course "Manipulation of NGS Data for Genomic and Population Genetics Analyses" taught by François Sabot and Julie Orejuela on June 5-14th, 2024.
More information and registration on the course webpage: https://www.transmittingscience.com/...tics-analyses/
The course programme includes:
- Introduction to NGS sequencing platforms.
- Introduction to basic command lines.
- Basic raw data manipulations (counting sequences, listing files).
- Raw data QC & Cleaning.
- Introduction to TOGGLe, a NGS pipeline framework.
- Mapping: principle, tools, execution.
- Mapping: cleaning, data control, realigning, duplicates marking.
- SNP calling: raw calling, cleaning calling, filtering.
- VCF manipulations: filtering on MAF, heterozygosity…
- Impact of SNPs on genes.
- Population genomics using sNMF.
- Context-based analyses.
- Piping large scale analyses for multiple samples using TOGGLe.
- Testing new tools and different conditions to answer different biological questions.
Best regards,
Ana
Ana Rosa Gómez Cano, PhD.
Transmitting Science Communication Manager
[email protected]