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454 gsMapper error codes

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  • 454 gsMapper error codes

    Hi everyone, I was wondering if someone here could help me. I've already sent a few emails out to the people who gave me this software (after they got permission) so if they solve it first I'll come back and mark it as solved.
    This is the first time I've had to compile everything for gsMapper myself, I'm using a .fasta as a reference, and .fna files formatted
    >name
    sequence
    I finally got past my running out of memory issue by cutting the fna files in half but now I'm getting a terminating error that I have no idea how to fix. the error reads
    "Error: An internal error (exit status 9) has occurred in the computation"
    It always happens when the project is generating output and reading flowgrams.

    any suggestions?

  • #2
    In my experience, these errors indicate bugs in the program. I'd try other versions of newbler (newer or older)...

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    • #3
      I was actually just on my way back here to say I solved it by updating to 2.5 Thank you for your help though.

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