Dear All,
I am curious to know for a RNAseq experiment what would be the ideal statistics to measure the coverage of reads across known features. The options I am confused with are whether I should go with coverage of complete transcripts or simply work on the coverage of exons. Also there are some transcripts which have high coverage on only one of the exons hence how to interpret such results.
I am curious to know for a RNAseq experiment what would be the ideal statistics to measure the coverage of reads across known features. The options I am confused with are whether I should go with coverage of complete transcripts or simply work on the coverage of exons. Also there are some transcripts which have high coverage on only one of the exons hence how to interpret such results.
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