Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Time
  • Show
Clear All
new posts
Previous template Next
  • shinoda90
    Junior Member
    • Jun 2012
    • 2
    #1

    Splice Junction for DNA

    Hi!!
    Can anyone introduce me a software to recognize splice junction on DNA sequence? I'm an undergraduate student and all these things are new for me..
    thanx.
    Tags: dna
    • Michael.James.Clark
      Senior Member
      • Apr 2009
      • 207
      #2
      Great question. ANNOVAR has limited ability to at least annotate exon-intron boundaries by defining X number of bases at the exon-intron boundary as "splicing".

      This is fairly inaccurate, but better than nothing.

      I do not know of a program that assesses splicing in next gen DNA sequencing data correctly. There seem to be quite a few for RNAseq analysis.

      There may be some older programs that may work for this purpose.
      Mendelian Disorder: A blogshare of random useful information for general public consumption. [Blog]
      Breakway: A Program to Identify Structural Variations in Genomic Data [Website] [Forum Post]
      Projects: U87MG whole genome sequence [Website] [Paper]

        Comment

        • shinoda90
          Junior Member
          • Jun 2012
          • 2
          #3
          Thank You very much.. I will try using this..

            Comment

            Previous template Next

            Latest Articles

            Collapse
            • SEQadmin2
              Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
              by SEQadmin2



              Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

              Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating              ...
              10-14-2026, 09:55 AM
            • SEQadmin2
              New Genomics Technologies Take Aim at Long-Standing Limits
              by SEQadmin2


              Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

              We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing              ...
              09-28-2026, 10:25 AM
            View All

            ad_right_rmr

            Collapse

            News

            Collapse
            Topics Statistics Last Post
            Mayo Clinic-Led Study Detects DNA Mutations Across Noncancerous Tissues by SEQadmin2
            Started by SEQadmin2, Yesterday, 10:52 AM
            0 responses
            10 views
            0 reactions
            		 Last Post SEQadmin2
            by SEQadmin2
            Yesterday, 10:52 AM  
            Study Finds Chromatin Motion Holds Steady Until Cells Face Stress by SEQadmin2
            Started by SEQadmin2, 10-14-2026, 05:39 AM
            0 responses
            19 views
            0 reactions
            		 Last Post SEQadmin2
            by SEQadmin2
            10-14-2026, 05:39 AM  
            Larger Datasets Reveal Additional Switches That Control Gene Expression by SEQadmin2
            Started by SEQadmin2, 10-13-2026, 09:56 AM
            0 responses
            17 views
            0 reactions
            		 Last Post SEQadmin2
            by SEQadmin2
            10-13-2026, 09:56 AM  
            Computational Tool Captures How Chromatin Folds at Scale by SEQadmin2
            Started by SEQadmin2, 10-09-2026, 11:14 AM
            0 responses
            27 views
            0 reactions
            		 Last Post SEQadmin2
            by SEQadmin2
            10-09-2026, 11:14 AM  
            View All
            Working...