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cmccabe

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Join Date: Jul 2012

Posts: 355
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#1

view BAM syntax

07-18-2012, 10:52 AM

Hello,

Is the correct comand for viewing a BAM.

Samtools view [region] = Samtools view chr1:115251042-115251155

Thank you.
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vadim

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Join Date: Sep 2009

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#2

07-19-2012, 12:37 AM

samtools index <bam file>
samtools view <bam file> chr1:115251042-115251155
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