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  • biouser
    Junior Member
    • Aug 2012
    • 7
    #1

    finding SNPs using aligments!

    Hi all,

    im trying to find SNPs in alignments after aligning reads using alignments softwares such as bowtie. does samtool find SNPs? if not can you introduce some powerfull and free softwares that find SNPs using inputs with "sam" or "bam" format?

    thanks in advance.
    Tags: None
    • adaptivegenome
      Super Moderator
      • Nov 2009
      • 436
      #2
      Please take a little time to search SEQanswers before posting these kids of general questions.

        Comment

        • ECO
          --Site Admin--
          • Oct 2007
          • 1360
          #3
          I am closing this. Please have the courtesy to search before asking the most basic questions.

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