installation of samtools-tabix
hi dears,
i am trying to install Tophat-2.0.0 in fedora 17, i have installed samtools and copied libbam.a file in usr/local/lib and copied .h files in usr/local/include/bam as mentioned. I have installed boost libraries in user/local/include.
i ran ./configure command in tophat and ran make command which showed error
/usr/bin/ld: segment_juncs.o: undefined reference to symbol '_ZN5boost6system15system_categoryEv'
/usr/bin/ld: note: '_ZN5boost6system15system_categoryEv' is defined in DSO /usr/local/lib/libboost_system.so.1.53.0 so try adding it to the linker command line
/usr/local/lib/libboost_system.so.1.53.0: could not read symbols: Invalid operation
collect2: error: ld returned 1 exit status
make[2]: *** [segment_juncs] Error 1
make[2]: Leaving directory `/root/NGS/tophat-2.0.0/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/root/NGS/tophat-2.0.0'
make: *** [all] Error 2
can u please help me in this regard.
i am trying to install Tophat-2.0.0 in fedora 17, i have installed samtools and copied libbam.a file in usr/local/lib and copied .h files in usr/local/include/bam as mentioned. I have installed boost libraries in user/local/include.
i ran ./configure command in tophat and ran make command which showed error
/usr/bin/ld: segment_juncs.o: undefined reference to symbol '_ZN5boost6system15system_categoryEv'
/usr/bin/ld: note: '_ZN5boost6system15system_categoryEv' is defined in DSO /usr/local/lib/libboost_system.so.1.53.0 so try adding it to the linker command line
/usr/local/lib/libboost_system.so.1.53.0: could not read symbols: Invalid operation
collect2: error: ld returned 1 exit status
make[2]: *** [segment_juncs] Error 1
make[2]: Leaving directory `/root/NGS/tophat-2.0.0/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/root/NGS/tophat-2.0.0'
make: *** [all] Error 2
can u please help me in this regard.