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Hi everyone,
in recent times new de-novo transcriptomes pop up nearly every day. I assembled two non-model species transcriptomes de-novo for a collaborator who is mainly interested in the identification of genes (mainly to circumvent the need of degenerate PCR). Neither of us is really interested in doing much more with the data, but we feel that it should be published somewhere.
This is what we could provide:
1. Assembly of the HiSeq2000 Reads using Velvet/Oases --> Description of methodology and basic assembly stats
2. The final assembly can be annotated (simple reciprocal blast based) and uploaded to a collaborators repository for everyone to search/blast.
Based on some experience, this kind of data is hard to publish in PloS One or similar journals due to lack of further analysis.
Is anyone aware of a peer-reviewed journal that publishes this kind of resources?
Thanks a lot for suggestions!
in recent times new de-novo transcriptomes pop up nearly every day. I assembled two non-model species transcriptomes de-novo for a collaborator who is mainly interested in the identification of genes (mainly to circumvent the need of degenerate PCR). Neither of us is really interested in doing much more with the data, but we feel that it should be published somewhere.
This is what we could provide:
1. Assembly of the HiSeq2000 Reads using Velvet/Oases --> Description of methodology and basic assembly stats
2. The final assembly can be annotated (simple reciprocal blast based) and uploaded to a collaborators repository for everyone to search/blast.
Based on some experience, this kind of data is hard to publish in PloS One or similar journals due to lack of further analysis.
Is anyone aware of a peer-reviewed journal that publishes this kind of resources?
Thanks a lot for suggestions!